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GAGE package
•
reset
1
vote
2
replies
1.4k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
7.7 years ago
joanito.liberti
• 0
2
votes
4
replies
1.7k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
sup230
▴ 30
0
votes
2
replies
3.7k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 2.2 years ago by
Helen
• 0 • written 6.2 years ago by
tarun2
• 0
5
votes
7
replies
2.8k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
Miskey, Csaba
▴ 20
1
vote
2
replies
1.1k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
5.8 years ago
atakanekiz
▴ 30
0
votes
2
replies
1.6k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 7.5 years ago by
Luo Weijun
★ 1.6k • written 7.6 years ago by
Michael
• 0
0
votes
0
replies
899
views
GAGE for non model organism
gage package
gage
5.8 years ago
melkile26
• 0
0
votes
1
reply
936
views
Question on Gage
gage package
path.ids
RNA-Seq
7.8 years ago
rl1385
• 0
1
vote
0
replies
1.5k
views
DESeq2 - GAGE workflow
gage package
deseq2
6.8 years ago
sup230
▴ 30
0
votes
0
replies
914
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
7.8 years ago
smt8n
• 0
10 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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to
Michael Love
42k
Popular Question
to
Haibo Liu
• 0
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to
HS
▴ 10
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to
DevelopingHippo
• 0
Scholar
to
Robert Castelo
★ 3.3k
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